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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaagtttgaacatgattttaaatattttgtatatctctctgaacttttaataatcaaaacttgcttttatttagAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG

Basic information

species Glycine max
transcript GLYMA13G41490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 5
gtatgttgaag----tttgaacatgattttaaatattttgtatatctctctgaacttttaataatcaaaacttgcttttatttagAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||||        |||| |  |  ||| ||  | ||| |     | |   ||||  |  | |    || |  | | |    |||||||||||||||||| || ||||  | || | ||| ||||  |||||||||||||| || || ||||| || ||||||||||| || || |||||||||
gtatgttagtacatttttgcagcttgtttcaaccactttct-----tttgcaaactgcttttgagttgaagtctcatgt---cagAGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAG

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttgaagtttgaacatgattttaaatattttgtatatctctctgaacttttaataatcaaaacttgcttttatttagAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||| ||   |||||  |  || ||  |    | | | |       |  || |||||    | |   |||||||| ||| |||||||| ||||||||| |||| || |||||||| || |  |||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
gtatgt-gagacttgaattt--ttataggttccatttttttgcgcactagtttctaatagaggacatgggcttttatgtagGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAG

upper sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttgaagtttgaacatgattttaaatattttgtatatctctctgaacttttaataatcaaaacttgcttttatttagAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
|||||| ||    ||||  |  || ||  |    | | | |       |  || |||||    | |   |||||||| ||| |||||||| ||||||||| |||| || |||||||| || |  ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
gtatgt-gagacctgaattt--ttataggttccatttttttgcgcactagtttctaatagaggacatgggcttttatgtagGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTCTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattttgtatatctctctgaacttttaataatcaaaacttgcttttatttagAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAG
                         ttttaat  putative branch site (score: 3)
                                        cttgctttt  putative PPT
                         ttttaataatcaaaac  TA-rich tract