1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttgacagcttagctagcataccttagacattacccatttatttttggacattgtatactttgaatttgagtatatggttctgcttacacatattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCTCTTGAGCCATCATCATCTACTACTTCCAATGTGGCTGATGTTCCTGAT
species | Glycine max |
transcript | GLYMA13G39120.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG TGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCEST: gi|213595694|gb|DB962466.1|DB962466
genomic: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAGgtaataatat ... catattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCC
EST: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG TGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCEST: gi|213593287|gb|DB969917.1|DB969917
genomic: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAGgtaataatat ... catattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCC
EST: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG TGAGTTTGAGGAACTAGAAGCAGTEST: gi|151408519|gb|EV278327.1|EV278327
genomic: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAGgtaataatat ... catattgcagTGAGTTTGAGGAACTAGAAGCAGT
EST: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG TGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCEST: gi|9819945|gb|BE555458.1|BE555458
genomic: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAGgtaataatat ... catattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCC
EST: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG TGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCC
genomic: AATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAGgtaataatat ... catattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCC
ttggacattgtatactttgaatttgagtatatggttctgcttacacatattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCTCTTGAGCCATCATCATCTACTACTTCCAATGTGGCTGATGTTCCTGAT
tgcttac putative branch site (score: 2)
tatactttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgacagcttagctagcataccttagacattacccatttatttttggacattgtatactttgaatttgagtatatggttctgcttacacatattgcagTGAGTTTGAGGAACTAGAAGCAGTACCAACTATGGCAGTAATGGATGGTCCTCTTGAGCCATCATCATCTACTACTTCCAATGTGGCTGATGTTCCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - -gcatacc
- - - - - - - - - - - - - - - - - -ccattta