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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgggattttcattatgctgtgttttgttataaaaaaaactttttattgatgtttcatgataccatatcatattgtttttgcagACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCT

Basic information

species Glycine max
transcript GLYMA13G38930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g00440.t01 (Vitis vinifera), 3'ss of exon 4
gtttgggattttcattatgctgtgttttg--ttataaaaaaaactttttattgatgtttcatgataccatatcatattgtttttgcagACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCT
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gtttggtcgcttatttgtcaaattgtttgactttttagatgatctttatttttctgttccattacattgcttcg-atgtggtttgcagACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaaaaaaactttttattgatgtttcatgataccatatcatattgtttttgcagACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCT
               tattgat  putative branch site (score: 3)
                                           ttgttttt  putative PPT
     aaaaactttttattga  TA-rich tract