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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttactactagatattgaaccaacaaacacagtagggctgttgtttacataaatttgtcttaccttgtagGTCTTTCAATCTGGTTTCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGTCCTCTTTATCGTGCGACAAG

Basic information

species Glycine max
transcript GLYMA13G37590.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37590.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 6
------------gtttgttttactactagatattgaaccaacaaacacagtagggctgttgtttacataaatttgtcttaccttgtagGTCTTTCAATCTGGTTTCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGTCCTCTTTATCGTGCGACAAG
             ||||||   || | | |  |||    |      |   |       |||  | | | |||||| ||| |||||||||||   |||| ||||||||  | ||||| |||||  | || || ||||||| | | |||||| ||||||||||||||||||||||||| |  ||
gttagtttggaactttgttcacctcccaaaccttggggaatattgtaaccttccataattgggt-cttgaatttg-ctttccttgtagGTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaccaacaaacacagtagggctgttgtttacataaatttgtcttaccttgtagGTCTTTCAATCTGGTTTCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGTCCTCTTTATCGTGCGACAAG
                                         gtcttac  putative branch site (score: 3)
                                          tcttacctt  CT-rich tract
                         ttgtttacataaattt  TA-rich tract