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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattagccttaattactcttttggaaccactcaagttgtcttctccttccaaatttggatccttttgccaacaacttttactgtatgcattatacaatgttgccaagtttggttcactaactatagaggaaatacaacgaaaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTACCAAATTGTAGATCCAGGCATTGGCATCCCGGCCAGCCAACCGCCACCTC

Basic information

species Glycine max
transcript GLYMA13G37010.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105783|gb|BI893523.1|BI893523
EST:     ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactatta ... aaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
EST: gi|20448946|gb|BQ253070.1|BQ253070
EST:     ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactatta ... aaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
EST: gi|151404848|gb|EV274662.1|EV274662
EST:     ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactatta ... aaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
EST: gi|22933590|gb|BU550729.1|BU550729
EST:     ACGCGCCAACCACAGGAACACCGTGTTTTCCACAANCTCTGACAACCACG                         AGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactatta ... aaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC
EST: gi|22525592|gb|BU084403.1|BU084403
EST:     ACGCGCCAACCACAGGAATACTGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAT
genomic: ACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactatta ... aaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttgccaagtttggttcactaactatagaggaaatacaacgaaaacacgcagAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTACCAAATTGTAGATCCAGGCATTGGCATCCCGGCCAGCCAACCGCCACCTC
                   cactaac  putative branch site (score: 1)
                      taactata  TA-rich tract