1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatttagcatatattgtttgctattggctgttttgcttatcagaccacttttgcatcttaagtattcagttctccctgacctttcttacgaatctttaagGGAGAAGCAAAAAGTGCCCAACTAATTGGACAGGCTATTGCCAACAATCCAGCTTTTATCACACTGAGGAAGATAGAAGCGGTACGAGAGATTGCACATA
species | Glycine max |
transcript | GLYMA13G36940.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGAAAAAGCTGAGCAAGACAAGAGAAGTGCTGTAATTAGAGCACAG GGAGAAGCAAAAAGTGCCCAACTAATTGGACAGGCTATTGCCAACAATCCA
genomic: TTGTAGAAAAAGCTGAGCAAGACAAGAGAAGTGCTGTAATTAGAGCACAGgtgacgataa ... aatctttaagGGAGAAGCAAAAAGTGCCCAACTAATTGGACAGGCTATTGCCAACAATCCA
cacttttgcatcttaagtattcagttctccctgacctttcttacgaatctttaagGGAGAAGCAAAAAGTGCCCAACTAATTGGACAGGCTATTGCCAACAATCCAGCTTTTATCACACTGAGGAAGATAGAAGCGGTACGAGAGATTGCACATA
ttcttac putative branch site (score: 2)
tcttt putative PPT
ttaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttagcatatattgtttgctattggctgttttgcttatcagaccacttttgcatcttaagtattcagttctccctgacctttcttacgaatctttaagGGAGAAGCAAAAAGTGCCCAACTAATTGGACAGGCTATTGCCAACAATCCAGCTTTTATCACACTGAGGAAGATAGAAGCGGTACGAGAGATTGCACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - gcatata
- - - - - - - tgtttgc
- - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - -tgcttat
- - - - - - - - - - - - - - - - - - - - cagacca
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcatct