Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatatcttgattatcttccattctaccttaataatataaagaaaaagaaaaaaaaaagtcaaattactttaaatatatttctcatgtgtcaataaaattggctttccataagagcggtagttgatataatattgatatttctggttttgtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTCCACGTTATTGATCCTTTCTGGCATA

Basic information

species Glycine max
transcript GLYMA13G36280.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36280.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 5
gtatttatatcttgattatcttccattctaccttaataatataaagaaaaagaaaaaaaaaagtcaaattactttaaatatatttctcatgtgtcaataaaattggctttccataagagcggtagttgatataatattgatatttctggttttgtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTCCACGTTATTGATCCTTTCTGGCATA
                     | ||||      |    | || | |       |||||   | |    |       | |||  |    | ||| ||||| | ||     | ||||     || | ||||    | ||||    || ||         ||| ||||  | ||||||||||| |||||||||||  | || |||||||| || ||  | |||||||| ||||| ||||| |||||||| ||||| |||||||| |
------------------gtatgcatttgtttctgtccacattaggcct---caaaaattgatttgggtcgtaagtactattatctgaaagtgacaataca-ttcatcattcatagttttggaaattgact--acattg----ttttga--------atgcagAACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGCCTAATAGCATTCCATGGCCATGTACACGTTATAGATCCCTTCTGGCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341617|gb|CO982934.1|CO982934
EST:     CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG                         AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
EST: gi|13787959|gb|BG650551.1|BG650551
EST:     CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG                         AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
EST: gi|151404938|gb|EV274752.1|EV274752
EST:     CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG                         AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccataagagcggtagttgatataatattgatatttctggttttgtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTCCACGTTATTGATCCTTTCTGGCATA
                          tattgat  putative branch site (score: 3)
                                         ttttgttt  putative PPT
              tagttgatataatatt  TA-rich tract