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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcccgtgaactaaactgagataattctgctttctctatttagttataaatgtatttgttgacacttcagGCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG

Basic information

species Glycine max
transcript GLYMA13G36140.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36140.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtgtcccgtgaactaaactgagataattctgctttctctatttagttataa-----------atgtatttgttgac-acttcagGCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG
|||||   |  |  ||  || |    |  ||| |  |   ||| || |   | ||           ||||  |  |  |    | ||||| |||||||| ||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  ||
gtaagctgcttgctaa--aaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccagGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8286475|gb|BE024043.1|BE024043
EST:     TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGG                         GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG
genomic: TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGgtaagtgtcc ... gacacttcagGCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG
EST: gi|18709588|gb|BM522441.1|BM522441
EST:     TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGG                         GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG
genomic: TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGgtaagtgtcc ... gacacttcagGCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagataattctgctttctctatttagttataaatgtatttgttgacacttcagGCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG
                                         tgttgac  putative branch site (score: 3)
               tttctctatttagtta  TA-rich tract