Sequence
atgc intronic sequence ATGC exonic sequencegtatccttcaaatcaaatgattgtagtgttggtttatatataactattttattgcacttcgttttccaattatgtctaatgccatactggaagctacaataccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G31970.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g37610.1 (Oryza sativa), 3'ss of exon 4
------------------gtatccttcaaatcaaatgattgtag----tgttggtttatatataactatt-ttattgcacttcgttttccaattatgtctaatgccatactggaagcta--caataccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
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gtatccaaaaaattctatgtatcttcatcagcaatttcctctagataatatagatttactagtaaatactgtcatttttttcacgtgtttttttttgtttaaactcttgcctgttcttaagtgtttccttaaccctccaacagCTCAAATTCTGTTATTACCCCTTTGTTTGAGAAAATGTTAAGTGCTAGTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG
upper sequence: GLYMA13G31970.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G008356_T01 (Zea mays), 3'ss of exon 4
gtatccttcaaat-caaatgattgtagt--gttggtttatatataactattttattgcacttcgttttccaattatgtctaatgccatactgg---aagctacaata------ccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
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gtatccgacacattctacttatgttaataagtaattttccttggcattactttctgtagtcataattcccaacttccatagatatgttattcgtttgaactctattgagttttacttaactttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGATGCTGGGCGGATTGGTCGTTTAGTTTTGCCAAAGAAGTGTGCTGAG
upper sequence: GLYMA13G31970.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 5
gtatccttcaaatcaaatgattgtagtgttggtttatatataactattttattgcacttcgttttccaattatgtctaatgccatactggaagctacaataccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
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------------tgaagattcattagagtttgctt-tatataatta----gatgcaaaatgcctgttgaactt-tctatttacaatttagcatcctatagaccttaaccatgtgtaagTTCAAATTCTGTAATCACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGATGCTGGGCGTATAGGGCGTTTAGTGCTGCCAAAAAAATGTGCTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccaattatgtctaatgccatactggaagctacaataccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
taccttaac putative branch site
ctttatccc putative PPT
ttaactttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatccttcaaatcaaatgattgtagtgttggtttatatataactattttattgcacttcgttttccaattatgtctaatgccatactggaagctacaataccttaactttatcccagTTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT