1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacttcaatgtgcttctataatcacctttttgtataattgtattcatcatgcatgattgcatgcagcatccttaatttttccaatttattttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATATTAGCCTTAGCTTTCCTTCTTGTTGTGTTTAACT
species | Glycine max |
transcript | GLYMA13G31880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTTTGGGCCTAGGGCAACCAA ATGCTTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACEST: gi|57574407|gb|CX547382.1|CX547382
genomic: GCTTTTGGGCCTATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
EST: TATGGC-ACCAA ATGCCTCCAGGAGGGATTCTCACTGCTTNGTATGCATTTCACAGTCATGACEST: gi|6915796|gb|AW397326.1|AW397326
genomic: TATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
EST: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCCTATGGCAACCAA ATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
genomic: TGTGCCTCTTCCCTATTGCTATTGGTGGCTTTTGGGCCTATGGCAACCAAgtaagtaaac ... tttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGAC
catcatgcatgattgcatgcagcatccttaatttttccaatttattttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATATTAGCCTTAGCTTTCCTTCTTGTTGTGTTTAACT
ccttaat putative branch site (score: 4)
tttattttctt putative PPT
ttaatttttccaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacttcaatgtgcttctataatcacctttttgtataattgtattcatcatgcatgattgcatgcagcatccttaatttttccaatttattttcttacagATGCCTCCAGGAGGGATTCTCACTGCTTTGTATGCATTTCACAGTCATGACATCTCAAGAGGAATATTAGCCTTAGCTTTCCTTCTTGTTGTGTTTAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - -tgcttct
- - - - - - - - - - aatcacc
- - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca