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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactttatcacagttctattgtatttttgcttaaatccgtaaaagtaaatctcattactgttccatatatgttgtagGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAG

Basic information

species Glycine max
transcript GLYMA13G30050.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30050.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 5
gtatgcactttat-cacagt-----tctattgtatttttgcttaaatccgtaaaagtaaatctcattactgttccatatatgttgtagGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAG
||| |      |  |||||      ||| || ||| |||   ||| | |  ||  || | |    | | |||| | |  || ||  ||||| || |||||||| ||||||||||||||||||||||| ||  | |||||||  || ||
gtaggtctcccacacacagaaactgtcttttctatctttatataa-tgcaaaatggtga-ttgattcaatgttacttcaatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgcttaaatccgtaaaagtaaatctcattactgttccatatatgttgtagGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAG
                 taaaagtaaat  TA-rich tract