Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtttcaaggttttcaaggaattaattgacaaatccacaccacaacttgtatgaaacatttttttttctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG

Basic information

species Glycine max
transcript GLYMA13G29400.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29400.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G25950.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatagtttcaaggttttcaaggaattaattgacaaatccacaccacaact-------tgtatgaaacatttttttttctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
||||    |   | || |     | ||| ||   |||| |  |  |||| |       || |  ||  ||| |   |||| |||||||||||||| || | ||| ||| |||||||||| || ||||||||||| ||
gtattccgttgtgattattttt-acttacttattaaatgccaaagacaattgcactaatgcagaaacaattgtgagttcttttgaagGAATGGGAGTTAGCTGAAAATTTGCAAGGAGTCTTAGAATACCAGACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315528|gb|GR825337.1|GR825337
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAA-GGAGTATTGGAATACCAGACAAG
EST: gi|254342188|gb|GR853325.1|GR853325
EST:     TCGAGAAGGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: TCGAGAA-GGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|11690379|gb|BF598055.1|BF598055
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|254317765|gb|GR826749.1|GR826749
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|193658986|gb|FK602111.1|FK602111
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGG
EST: gi|298178150|gb|HO027533.1|HO027533
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGA
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGA
EST: gi|207764167|gb|GD737982.1|GD737982
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298192219|gb|HO036301.1|HO036301
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCACAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|18039284|gb|BM307578.1|BM307578
EST:     CTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: CTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|151402759|gb|EV272572.1|EV272572
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298164736|gb|HO014381.1|HO014381
EST:     ATCGGGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|21888807|gb|BQ742020.1|BQ742020
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298180957|gb|HO022396.1|HO022396
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAATGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298192873|gb|HO033307.1|HO033307
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|254317766|gb|GR826750.1|GR826750
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|208116855|gb|GD915809.1|GD915809
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|208084942|gb|GD882778.1|GD882778
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298167595|gb|HO012858.1|HO012858
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|192294103|gb|FG986192.1|FG986192
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|8402306|gb|BE057940.1|BE057940
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|207843207|gb|GD816809.1|GD816809
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|192300261|gb|FG987838.1|FG987838
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCACGCAGACTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298171596|gb|HO021188.1|HO021188
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|254315527|gb|GR825336.1|GR825336
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298169227|gb|HO020587.1|HO020587
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298189728|gb|HO038131.1|HO038131
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298166356|gb|HO008593.1|HO008593
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298175426|gb|HO015059.1|HO015059
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298179820|gb|HO025035.1|HO025035
EST:     ATCGAGAAGGAATTGACTCTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298196871|gb|HO041614.1|HO041614
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298172694|gb|HO019734.1|HO019734
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|20498002|gb|BQ272932.1|BQ272932
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|151393588|gb|EV263463.1|EV263463
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCCCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|207796498|gb|GD769792.1|GD769792
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298163228|gb|HO011961.1|HO011961
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|254342187|gb|GR853324.1|GR853324
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298183628|gb|HO028841.1|HO028841
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|207785437|gb|GD756962.1|GD756962
EST:     CGAGAAGGAATTGTACTTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: CGAGAAGGAATTG-AC-TTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|208265558|gb|GE063086.1|GE063086
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|51336638|gb|CO980504.1|CO980504
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|151412116|gb|EV281928.1|EV281928
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
EST: gi|298183208|gb|HO028193.1|HO028193
EST:     ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG                         GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
genomic: ATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttc ... tctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgacaaatccacaccacaacttgtatgaaacatttttttttctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG
  aattgac  putative branch site (score: 3)
                                   catttttttttctctt  putative PPT
                         ttgtatgaaacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatagtttcaaggttttcaaggaattaattgacaaatccacaccacaacttgtatgaaacatttttttttctcttgaagGAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG