1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgatattggaggcagcagagtgtatatattttcagcagacaatgaaaatgcacacaattcagtatttaatttcaaattttcaatatgtaatgactgtagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAA
species | Glycine max |
transcript | GLYMA13G28650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAG ATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCEST: gi|151397025|gb|EV266898.1|EV266898
genomic: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGgtggcttaaa ... atgactgtagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCC
EST: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAG ATTGAGAGCAGCTGGTAAAGCTAATGTTGATGGTGTCAAGAAATCTCGTCC
genomic: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGgtggcttaaa ... atgactgtagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCC
aaaatgcacacaattcagtatttaatttcaaattttcaatatgtaatgactgtagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAA
atttaat putative branch site (score: 4)
aattcagtatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatattggaggcagcagagtgtatatattttcagcagacaatgaaaatgcacacaattcagtatttaatttcaaattttcaatatgtaatgactgtagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - ttggagg
- - - - - - - - - - - - - - - - - -gcagaca
- - - - - - - - - - - - - - - - - - - - - - - - - -cacacaa