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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctagctcattatcatctgttattatatttaattatgtttttgacccatttctatattttcatttaatgagtagtagtagtttacctgatctttgagagtgatttcagGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTG

Basic information

species Glycine max
transcript GLYMA13G25690.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25690.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G02090.1 (Arabidopsis thaliana), 3'ss of exon 5
----gtcctagctcattatcatctgttattatatttaattatgtttttgacccatttctatattttcatttaatgagtagtagtagtttacctgatctttgagagtgatttcagGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTG
    ||  | | |      |  || ||  ||| |||||  ||   | ||     |||||| |  | |          |  ||  |  | |  |     |||  |     | ||||| |  |||||||||||||||||  | ||||| | |||||||||||||||| |||| ||  | || |||||
gtgtgttttggtttgg-gcctccttttcctat-tttaaccat---tgtgctttgtttctaaacgtacgagcccccccttctaa-acatcatatatctcttgcaacca--tgcagGTTCCGTTTGCAGCTGGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053359|gb|BM732026.1|BM732026
EST:     GGAATAGTTCGAGGAAAAGTTG-ATCAGTTGCGGCGGTGCTTTGAG                         GTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTANGGGA-TAT
genomic: GGAATAGTTCGAGGAAA-GTTGGATCAGTTGCGGCGGTGCTTTGAGgtcctagctc ... gtgatttcagGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTA-GGGAATAT
EST: gi|16346940|gb|BI972535.1|BI972535
EST:     GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG                         GTCCAATTTGCAGCTGGTAGG
genomic: GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGgtcctagctc ... gtgatttcagGTCCAATTTGCAGCTGGTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttcatttaatgagtagtagtagtttacctgatctttgagagtgatttcagGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTG
                              acctgat  putative branch site (score: 4)
     ttcatttaat  TA-rich tract