Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacttttactcaacatttatggactctttgtggacatccaattaatttggtcatgattagtggtgaattatagtctgagtaatgaataattgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC

Basic information

species Glycine max
transcript GLYMA13G24630.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 5
acactt-ttactcaacatttatggactctttg---tggacatccaattaatttggtcatgattagtggtgaattatagtctgagtaatgaataattg-tttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC
  | |  |||   ||   ||||  |      |   |||  |      ||| |   || |  ||| |     |||| || ||  |   ||  |  ||  |||||||| |||||    || |||||||| ||||| ||  | ||||| |||||||||||  | || ||||| ||||| |||||||| || |||||||||||||||||
--attggttataaaatggttatccaaaaaaagaattggtaaaatggctaactgcatctt--ttattctattattaaagccttgg-ggtgcttgtttaatttgcagGCAAAAAGTGCAGTAAAGCTCCCAAGATACAGAGGTTGGTTACTCCTTTGACCTTGCAGAGGAAGCGAGCCAGGATTGCAGAGAAGAAGAAGAGAATTGC

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
--acacttttactcaacatttatggactctttgtggacatccaattaatttggtcatgattagtggtgaattatag-tctgagtaatgaataattgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC
    |  || |    |   |||       | | |    ||    ||  |||    | || ||  |    |  || | | ||  |     |   |  |   ||||||| |||   || ||||| || ||||||||  |  |||| || || ||||| || || ||||| || ||||||||||| || |||||||||||||||||
actgaaattcatgtgatgcttaaaagtattatttcagtatt---ttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401349|gb|BM178131.1|BM178131
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAG
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAG
EST: gi|20813984|gb|BQ298462.1|BQ298462
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|193337905|gb|FK305044.1|FK305044
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|209718264|gb|BW677488.1|BW677488
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|207840677|gb|GD811878.1|GD811878
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|13789843|gb|BG652434.1|BG652434
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|19345970|gb|BM890850.1|BM890850
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|207761654|gb|GD732821.1|GD732821
EST:     GTGAGAAAGTATGTTAACACGATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: GTGAGAAAGTATGTTAACAC-ATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|151395180|gb|EV265051.1|EV265051
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|254321711|gb|GR825028.1|GR825028
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|151400718|gb|EV270532.1|EV270532
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|192329630|gb|FK021916.1|FK021916
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|208093701|gb|GD892320.1|GD892320
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|9985110|gb|BE659218.1|BE659218
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|9564026|gb|BE473535.1|BE473535
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|298187081|gb|HO034230.1|HO034230
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGA
EST: gi|208263802|gb|GE065210.1|GE065210
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|254327971|gb|GR834936.1|GR834936
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|209707806|gb|BW683702.1|BW683702
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTC
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTC
EST: gi|151401801|gb|EV271614.1|EV271614
EST:     TGTGAGAAAGTATGTTAACACATGCCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAA-GTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|193380733|gb|FK346016.1|FK346016
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|254321712|gb|GR825029.1|GR825029
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|208242715|gb|GE038829.1|GE038829
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAA
EST: gi|254346474|gb|GR856196.1|GR856196
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|6726918|gb|AW311198.1|AW311198
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|298172238|gb|HO021830.1|HO021830
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAG
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAG
EST: gi|207758078|gb|GD726332.1|GD726332
EST:     TGTGAGAAAGTNTGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|192322367|gb|FK014608.1|FK014608
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|298186880|gb|HO033979.1|HO033979
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGA
EST: gi|151409894|gb|EV279702.1|EV279702
EST:     GTGAGAAAGTATGTTAACACATACCGTCGAACCTTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGGTCACTCCTTTG
genomic: GTGAGAAAGTATGTTAACACATACCGTCGAACCTTT-ATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGG-TCACTCCTTTG
EST: gi|22523471|gb|BU082282.1|BU082282
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|193629277|gb|FK572835.1|FK572835
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|6952274|gb|AW424342.1|AW424342
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|254327970|gb|GR834935.1|GR834935
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|192294910|gb|FG985928.1|FG985928
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|192329629|gb|FK021915.1|FK021915
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|254346475|gb|GR856197.1|GR856197
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|209697660|gb|BW655509.1|BW655509
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAG
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAG
EST: gi|31472781|gb|CD414809.1|CD414809
EST:     TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
EST: gi|7692616|gb|AW760718.1|AW760718
EST:     TGTGAGAAAGTAT-TTAACACATACCGTCGAACCTTTATAACAAAAGCTG                         GGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA
genomic: TGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTATAACAAAAGCTGgtaagtttct ... ttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggtcatgattagtggtgaattatagtctgagtaatgaataattgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC
 aattaat  putative branch site (score: 3)
                                   taatgaataattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acacttttactcaacatttatggactctttgtggacatccaattaatttggtcatgattagtggtgaattatagtctgagtaatgaataattgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - -ctcaaca
- - - - - - - - - - - - - ctttgtg
- - - - - - - - - - - - - - - - - acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - gtcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtggtg