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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacacgtatctactttctaacattaataaacttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 3'ss of exon 5
gtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacac-gtatctactttctaacattaataaacttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
                       ||| || |||  ||| |  || | ||| | | ||| | |     | |   | | | |    |    |  || |  |   ||  ||  ||  || |||||||||| ||||| |||||||| |||||||||||||| || ||||||||   | | ||  | ||  ||||| | || || ||||| ||||| || |
----------------------gtac-tgcaacagtatcttgattt-tatttttgtatttttggccttttgcgtttcttctttatgctgagatttttcctgcaaataaaatg-attgcagCTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTATCCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAG

upper sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G083344_T02 (Zea mays), 3'ss of exon 5
gtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacacgtatctactttctaacattaataaacttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
               | ||| | || |  ||  |   | | ||| | |||   |||   | ||  |   | | ||  |   |  |  |  || |  |  || | ||| ||      ||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||| || | ||  | ||  | |||||||| ||                 
---------------gtgat-tctatgataagttgattttctatttctattattatccctctacctcc-tgtttacttgtgctaagatgtttcc--agTTTTACAAA-TTACAACACAGCTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTT----------------

upper sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G083344_T03 (Zea mays), 3'ss of exon 5
gtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacacgtatctactttctaacattaataaacttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
               | ||| | || |  ||  |   | | ||| | |||   |||   | ||  |   | | ||  |   |  |  |  |||| |   |||  ||  ||      ||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||| || | ||  | ||  | |||||||| || | ||| || || ||||
---------------gtgat-tctatgataagttgattttctatttctattattatccctctacctcc-tgtttacttgtgctaagatg-tttccagttttacaaa--ttacaacacagCTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG

upper sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 5
gtaataaaagtttatgagat-atatac-------gtgaaactatatatatatatatatatatatatatatatatatatatatata---tacacgtatctactttctaacattaataaac------ttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
|| | | || | |||  ||| ||| |        |  || |  ||  |  |    | |  |   || |   | | |   |||| |   |||||   |  | | |||  |||  ||||        || ||||||||||||||| || |||||||||||||| ||||| || || ||||| || || || || ||| | ||  | ||||| || ||||| ||||||||| |||
gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgttatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588731|gb|AW704520.1|AW704520
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|15287940|gb|BI471831.1|BI471831
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26269191|gb|CA820254.1|CA820254
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20498046|gb|BQ272976.1|BQ272976
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22524479|gb|BU083290.1|BU083290
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20076102|gb|BQ094885.1|BQ094885
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTTCA-TGCTGCTGCT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTT-CAATGCTGCTGCT
EST: gi|16995981|gb|BM085353.1|BM085353
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|31561929|gb|CD487767.1|CD487767
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAAATGCTGCTGCTTCACAGTTCATACTTGGCCAA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAA-TGCTGCTGCTTCACAGTTCATACTTGGCCAA
EST: gi|10845918|gb|BF068938.1|BF068938
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22524883|gb|BU083694.1|BU083694
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9564410|gb|BE473919.1|BE473919
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22540054|gb|BU089897.1|BU089897
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|8404364|gb|BE059998.1|BE059998
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|17964192|gb|BM270931.1|BM270931
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|13481992|gb|BG511335.1|BG511335
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|23057815|gb|BU578270.1|BU578270
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGACAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|209721962|gb|BW669348.1|BW669348
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTC
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTC
EST: gi|7690833|gb|AW758970.1|AW758970
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9819687|gb|BE555200.1|BE555200
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|7926336|gb|AW832362.1|AW832362
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20448949|gb|BQ253073.1|BQ253073
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9900710|gb|BE609678.1|BE609678
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|23053059|gb|BU577550.1|BU577550
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|208277399|gb|GE081210.1|GE081210
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20449432|gb|BQ253556.1|BQ253556
EST:     CAATGTCTCATTTGCTGCAGATGGTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGGCATTCTTCAATGCTGCTGCTTCCCAGGTCATACTTGGGCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26048112|gb|CA784701.1|CA784701
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|151395328|gb|EV265199.1|EV265199
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|7285024|gb|AW597511.1|AW597511
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatatatatacacgtatctactttctaacattaataaacttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
                          tttctaacattaataa  TA-rich tract