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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgctgtcctatttttttttaaaacaattttttaattaccttttttccccacattatctttagtttatgcgaaggggcaacagatgtatctctgttttgggtttttgtttttgcaagcatcagcatatatccccttgtatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA

Basic information

species Glycine max
transcript GLYMA13G21370.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21370.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 5
---------------gtatgctgctgtcctatttttttttaaaacaattttttaattaccttttttccccacattatct----ttagtttatgcgaaggggcaaca-----gatgtatct-ctgttttgggtttttgtttttgcaagcatcagcatatatc---cccttgtatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA
                |   | |   ||  |||    |||   |    ||   |||  |   ||||    |  ||| ||    | |||   |  |  || |   ||     ||  ||| | || ||||  |||| | ||| |   ||  |     ||| |    | ||  | |  |||||||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||||||  || |||| ||| | || ||||||||||| |||||||| ||
gtagggtctttccccattcacagggctcacattaacctttttgattgattgaaaatgccaagttttatttaatttacctagtctgagtgcgtatgtgggtgtcccacttttgagatatgtgctcttttttgtttctatttctctcagttttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789881|gb|BG652472.1|BG652472
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
EST: gi|192316194|gb|FK011609.1|FK011609
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
EST: gi|51337898|gb|CO981764.1|CO981764
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgggtttttgtttttgcaagcatcagcatatatccccttgtatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA
                                     tccccttgtatctt  CT-rich tract
         tttttgttttt  TA-rich tract