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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgctattttaacactatttctgtaagtgttcttcatgttagtacttattttctatcttgtctggcagGTGGGGCAGATGAACATAACAGAATTCAAATACAGATATAACTCAAATGAGAAGGCAGTTGTCCTTTACAG

Basic information

species Glycine max
transcript GLYMA13G21230.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193318925|gb|FK283773.1|FK283773
EST:     CAACTGTTATGGCAGAGGAGCCTGGCAGTTTCAAACAATTTTGTGAATTG                         GTGGGGCAGATGAACATAACAGAATTCAAATACAGATATAACTCAAATGAG
genomic: CAACTGTTATGGCAGAGGAGCCTGGCAGTTTCAAACAATTTTGTGAATTGgtatgtctgc ... tgtctggcagGTGGGGCAGATGAACATAACAGAATTCAAATACAGATATAACTCAAATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatttctgtaagtgttcttcatgttagtacttattttctatcttgtctggcagGTGGGGCAGATGAACATAACAGAATTCAAATACAGATATAACTCAAATGAGAAGGCAGTTGTCCTTTACAG
                               cttattttctatctt  CT-rich tract
                         ttagtacttatttt  TA-rich tract