1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atattagcaagactgtagcttctggctttaattccaataaatcaaattttgtgcttttattggggtatatgactcaaatttggttttattgttctttcagGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAG
species | Glycine max |
transcript | GLYMA13G20210.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGATCATTGGCTGATGAGGTTGGTCTCAATGAACGATTTAACTCTGAG GGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTEST: gi|58016048|gb|CX702790.1|CX702790
genomic: ATCGATCATTGGCTGATGAGGTTGGTCTCAATGAACGATTTAACTCTGAGgtatctataa ... gttctttcagGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTT
EST: ATCGATCATTGGCTGATGAGGTTGGTCTCAATGAACGATTTAACTCTGAG GGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTT
genomic: ATCGATCATTGGCTGATGAGGTTGGTCTCAATGAACGATTTAACTCTGAGgtatctataa ... gttctttcagGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTT
attttgtgcttttattggggtatatgactcaaatttggttttattgttctttcagGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAG
ttttattgttctttc CT-rich tract
aaatttggttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattagcaagactgtagcttctggctttaattccaataaatcaaattttgtgcttttattggggtatatgactcaaatttggttttattgttctttcagGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - gactgta
- - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - -ccaataaa
- - - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaaa