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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggactttaaatcctgaatgcactaatatatacatttgttgtcttctcctttcctttttgctccgggagaatgtcaatagatgtggcaggagtagtgttgtcttccctctcacgatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTC

Basic information

species Glycine max
transcript GLYMA13G18170.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18170.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0005g02990.t01 (Vitis vinifera), 3'ss of exon 5
gtatgtggactttaaatcctgaatgcactaatatatacatttgttgtcttctcctttcctttttgctccgggagaatgtcaatagatgtggcaggagtagtgttgtcttccctctcacgatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTC
                                                             | || ||   || ||  |  ||   | |   |   ||    ||   || |   |   | |  |     |  | |    || ||     | ||||  |||| |   || ||||||||||||||||| ||| ||||| || |||||| ||||||| ||||| || || ||  |||| || || ||||||||||| ||||||| |     || | 
------------------------------------------------------------gtatgatc-atgataacctgtattcttctccaaaatgt----ttagtttgctgtttttggtggaacacatgctgtatgttggctgggcatgatgagtttgttt--gttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320597|gb|GR827046.1|GR827046
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|214004977|gb|DB989110.1|DB989110
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|9564054|gb|BE473563.1|BE473563
EST:     TGGATTCTTCGAGAGGAGTCCTCTCANGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151406209|gb|EV276024.1|EV276024
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151404411|gb|EV274221.1|EV274221
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|6951826|gb|AW423894.1|AW423894
EST:     TCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|7285126|gb|AW597613.1|AW597613
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|12497074|gb|BG047384.1|BG047384
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|213598058|gb|DB972246.1|DB972246
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|254320598|gb|GR827047.1|GR827047
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|192326348|gb|FK017665.1|FK017665
EST:     TGGATTTTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151398913|gb|EV268784.1|EV268784
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTC
                            ctttaat  putative branch site (score: 4)
                                            tcatttttc  putative PPT
       tttttatttttccat  TA-rich tract