1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcaaataagctgtaaattaactcttccaaacacaccctttgaatgtttatttgtgttaactagtaaatgttagcaataatgttttttgcttctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAACTGACCAGGCAATTGAGAGATCTAAGCAG
species | Glycine max |
transcript | GLYMA13G18030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAG AAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAAEST: gi|151403478|gb|EV273288.1|EV273288
genomic: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAGgtaaagtgtt ... tctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAA
EST: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAG AAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAAEST: gi|193456485|gb|FK424365.1|FK424365
genomic: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAGgtaaagtgtt ... tctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAA
EST: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAG AAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAAEST: gi|298194389|gb|HO041037.1|HO041037
genomic: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAGgtaaagtgtt ... tctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAA
EST: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAG AAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAA
genomic: AGCAGGAGTAAGCGTACCTACAGCTGAAGAAAATGTTCAACTGGCATCAGgtaaagtgtt ... tctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAA
tttatttgtgttaactagtaaatgttagcaataatgttttttgcttctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAACTGACCAGGCAATTGAGAGATCTAAGCAG
tgttaac putative branch site (score: 2)
ttttttgcttctatt putative PPT
aataatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaataagctgtaaattaactcttccaaacacaccctttgaatgtttatttgtgttaactagtaaatgttagcaataatgttttttgcttctattatagAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACGATGGATGAAACTGACCAGGCAATTGAGAGATCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - -agctgta
- - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - caccctt
- - - - - - - - - - - - - - - - - - - -tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - -tttgtgt