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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTGCGGCCATCATTATCAACAGTGGCCATT

Basic information

species Glycine max
transcript GLYMA13G11710.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11710.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0057g01260.t01 (Vitis vinifera), 3'ss of exon 6
gtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTGCGGCCATCATTATCAACAGTGGCCATT
                       ||||||   |   | | ||  | |   |  ||      | ||    ||||     | | |||     || | |   |||    | ||||||| |||||||||||||||||| |||||| ||||| || | ||||| || || |||| ||| || |||||||| ||||||||||| ||  || || |  ||
----------------------gtaagttaccagaaccaagtgcata---atacttacataaatttagcaaatc----tttggcacgatattcacttacagtctc-tttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269969|gb|BM886225.1|BM886225
EST:     TCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: TCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
EST: gi|7795557|gb|AW780954.1|AW780954
EST:     TTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: TTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
EST: gi|213612264|gb|DB974600.1|DB974600
EST:     GCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: -CCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTGCGGCCATCATTATCAACAGTGGCCATT
                               ttttaat  putative branch site (score: 3)
     ttatataaatgacaat  TA-rich tract