Sequence
atgc intronic sequence ATGC exonic sequencegtcagtcagttggtcttcaggataagattttatctttttatatttttgaaatctgccattataaactatgacatgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG
Basic information
species | Glycine max |
transcript | GLYMA13G07780.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
gtcagtcagttggtcttcaggataagatttta-tctttttatattttt-------gaaatctgccattataaactatgacatgtctgc-----agTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG
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gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207818181|gb|GD790198.1|GD790198EST: TTCAATTAGCCTCAATCCCTCTAGCAATTGGAGCATTTCTTGG TGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGG
genomic: TTCAATTAGCCTCAATCCCTCTAGCAATTGGAGCATTTCTTGGgtcagtcagt ... atgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatctttttatatttttgaaatctgccattataaactatgacatgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG
tctttttatatttttg TA-rich tract