Sequence
atgc intronic sequence ATGC exonic sequence...gtgagtgtgtgtgtgagagtgtgtgtatacatgcatgtgtgtgtattaggtggtaatatgacaacagatgtgacctttagtttcttatgttctgtgacagAATCTAAGGTCAAACCTGACGATGTGGAAGCTTGGAACCCTACCCCCTGCTTTGATTGCATTCAAAGGTCATGTTCACCCGATTGGCCCCTCTTGGCACA
Basic information
species | Glycine max |
transcript | GLYMA13G05950.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G05950.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G15470.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagtgtgtgtgtgagagtgtgtgtatacatgcatgtgtgtgtattaggtggtaatatgacaacagatgtgacctttagtttcttatgttctgtgacagAATCTAAGGTCAAACCTGACGATGTGGAAGCTTGGAACCCTACCCCCTGCTTTGATTGCATTCAAAGGTCATGTTCACCCGATTGGCCCCTCTTGGCACA
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gtaactctat---cgaataagcttacacttttttgtttttctttagcagAATCTAAAGTTACCTCTCTAATCTACTCTGTTTACTTTTGCTTTGGAACAGAATCTAAAGTCAAATCTGACAATGTGGAAACTTGGAACCTTGCCTCCTGCTCTTATCGCGTTCAAGGGTCACGTACACATAATAGACTCGTCATGGCATA
upper sequence: GLYMA13G05950.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtgtgtgtgtgagagtgtgtgtatacatgcatg-tgtgtgtattaggtggtaatatgacaacagatgtgacctttagtttcttatgtt-ctgtgacagAATCTAAGGTCAAACCTGACGATGTGGAAGCTTGGAACCCTACCCCCTGCTTTGATTGCATTCAAAGGTCATGTTCACCCGATTGGCCCCTCTTGGCACA
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-tgagcttttaattgattatatat-tttgtttaaatgataaaatttctgggatgtgcttagtcaccatttcttacttggattgtggggcctttctgttgtagAATCTGAAGTCAAACCTGACTATGTGGAAGCTTGGAACCCTACCTCCTGCTTTGATAGCATTTAAAGGTCATATTCACCCAATCGACCCATCCTGGCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaggtggtaatatgacaacagatgtgacctttagtttcttatgttctgtgacagAATCTAAGGTCAAACCTGACGATGTGGAAGCTTGGAACCCTACCCCCTGCTTTGATTGCATTCAAAGGTCATGTTCACCCGATTGGCCCCTCTTGGCACA
taatatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgtgtgtgtgagagtgtgtgtatacatgcatgtgtgtgtattaggtggtaatatgacaacagatgtgacctttagtttcttatgttctgtgacagAATCTAAGGTCAAACCTGACGATGTGGAAGCTTGGAACCCTACCCCCTGCTTTGATTGCATTCAAAGGTCATGTTCACCCGATTGGCCCCTCTTGGCACA
-tgagtgt
- - gtgtgtg
- - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - ggtggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgacc