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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaacaagattaaaatgtttcatacaaatagtttatatatctgaccgatttctcatcccttgcattctgtgtttgatttgatgatttgaatatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACAGAGACGAGACTGAGTAGAAATTTTAATATTTTGTAACTAGTTAATGTCC

Basic information

species Glycine max
transcript GLYMA13G05910.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720794|gb|FK657852.1|FK657852
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208069451|gb|GD872131.1|GD872131
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGGTTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208205284|gb|GE005275.1|GE005275
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193561632|gb|FK520641.1|FK520641
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAGGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193402900|gb|FK366018.1|FK366018
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193679198|gb|FK619240.1|FK619240
EST:     GCCGGGCTTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGC-TGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193350462|gb|FK315380.1|FK315380
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGGCAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|207813307|gb|GD782890.1|GD782890
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208244360|gb|GE039451.1|GE039451
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208217666|gb|GE014816.1|GE014816
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTTGGAGCGGAGGAC
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGA-TTTTGGAGCGGAGGAC
EST: gi|207826839|gb|GD797416.1|GD797416
EST:     AGCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: AGCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208039880|gb|GD840736.1|GD840736
EST:     CGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193371923|gb|FK336484.1|FK336484
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208280816|gb|GE078816.1|GE078816
EST:     CTGGATGCTGTTG                         TTAACACAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193694635|gb|FK628631.1|FK628631
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208071925|gb|GD867673.1|GD867673
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|207730788|gb|GD707003.1|GD707003
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGNTTTTGGNGCGGNGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|207836797|gb|GD807942.1|GD807942
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAAATTTACTGGGTTGGATTTTGGAGCGGAGGA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGAC-AATTT-CTGGGTTGGATTTTGGAGCGGAGGA
EST: gi|193650859|gb|FK598474.1|FK598474
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193421647|gb|FK391906.1|FK391906
EST:     GCCGGGCTGGATTGTCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
genomic: GCCGGGCTGGA-TG-CTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
EST: gi|193435558|gb|FK400730.1|FK400730
EST:     GCCGGGCTGGATTGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
genomic: GCCGGGCTGGA-TGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
EST: gi|193387572|gb|FK350021.1|FK350021
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208287928|gb|GE083549.1|GE083549
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGGTTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|207811463|gb|GD785162.1|GD785162
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208312165|gb|GE107357.1|GE107357
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208325756|gb|GE123274.1|GE123274
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|208151049|gb|GD944724.1|GD944724
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193672455|gb|FK618083.1|FK618083
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATTAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACA-TAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGAC
EST: gi|193467640|gb|FK433537.1|FK433537
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|207689335|gb|GD670860.1|GD670860
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193708783|gb|FK644573.1|FK644573
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGG
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGG
EST: gi|207780819|gb|GD751312.1|GD751312
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTTGGAGCGGAGGAC
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGA-TTTTGGAGCGGAGGAC
EST: gi|207714327|gb|GD696408.1|GD696408
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193314846|gb|FK281346.1|FK281346
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193391923|gb|FK355604.1|FK355604
EST:     GCCGGGCTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: GCCGGGCTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
EST: gi|193391734|gb|FK356549.1|FK356549
EST:     CTGGATGCTGTTG                         TTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA
genomic: CTGGATGCTGTTGgtaagtgaat ... atatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatttctcatcccttgcattctgtgtttgatttgatgatttgaatatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACAGAGACGAGACTGAGTAGAAATTTTAATATTTTGTAACTAGTTAATGTCC
                               atttgat  putative branch site (score: 5)
                                    atgatttgaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaaacaagattaaaatgtttcatacaaatagtttatatatctgaccgatttctcatcccttgcattctgtgtttgatttgatgatttgaatatttgcagTTAACATAGGGAAGATGACAATTTCTGGGTTGGATTTTGGAGCGGAGGACAGAGACGAGACTGAGTAGAAATTTTAATATTTTGTAACTAGTTAATGTCC

acaaaca
- - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg