1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttgcctccccttttatcttccttctccttattctcccttctccctagttagcaagcactttccgattgacaataatgatcaagcttttttttgtgtagGTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCATATTTAAATTCTGTTGGATGTGCCGTGACACTTGTTGGATGTACATTCT
species | Glycine max |
transcript | GLYMA13G03210.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAG GTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCAEST: gi|22934060|gb|BU551199.1|BU551199
genomic: TGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttcta ... ttttgtgtagGTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCA
EST: TGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAG GTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCA
genomic: TGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttcta ... ttttgtgtagGTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCA
ctagttagcaagcactttccgattgacaataatgatcaagcttttttttgtgtagGTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCATATTTAAATTCTGTTGGATGTGCCGTGACACTTGTTGGATGTACATTCT
gattgac putative branch site (score: 3)
cttttttttgt putative PPT
ttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgcctccccttttatcttccttctccttattctcccttctccctagttagcaagcactttccgattgacaataatgatcaagcttttttttgtgtagGTTGCTGTTGCTGTCCTTGTTTCTTGGCTAATTTTTAGGAACCCCATATCATATTTAAATTCTGTTGGATGTGCCGTGACACTTGTTGGATGTACATTCT
- - - ctcccct
- - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagcac