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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctttcattttgttctctttcgatttcactgttcattgtattgtcaactattctacctaacccatatgcactctttattcagAATCTTGCTGACAACTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCCGCCTTCATG

Basic information

species Glycine max
transcript GLYMA13G02180.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053311|gb|BM731978.1|BM731978
EST:     GAAGCAAGTGCAATCCGGCAGCTGCTGCAAGAAACCGTCATCTATGCGAG                         AATCTTGCTGACAACTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCCGC
genomic: GAAGCAAGTGCAATCCGGCAGCTGCTGCAAGAAACCGTCATCTATGCGAGgttgctttca ... ctttattcagAATCTTGCTGACAACTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttcattgtattgtcaactattctacctaacccatatgcactctttattcagAATCTTGCTGACAACTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCCGCCTTCATG
                           acctaac  putative branch site (score: 2)
                                           ctctttattc  putative PPT
       attgtatt  TA-rich tract