1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctattctccttgggcactggttattgcctatgaattgcgatttcaggtttacaaaaataatacttaatactaattgttttctctgaacctgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
species | Glycine max |
transcript | GLYMA13G01270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAGEST: gi|26047527|gb|CA784291.1|CA784291
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAAACA-GCAGEST: gi|207761436|gb|GD733765.1|GD733765
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAA-CAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTATTCTCATTTTCGCAAACAAGCAGEST: gi|7042626|gb|AW472520.1|AW472520
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAGEST: gi|12488647|gb|BG042170.1|BG042170
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAGEST: gi|192326406|gb|FK017693.1|FK017693
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAGEST: gi|15813778|gb|BI786053.1|BI786053
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTCTGGAG GAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAACAGEST: gi|9565450|gb|BE474959.1|BE474959
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
EST: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAG GAGGAAGAACTAAAAGGTGCAGNTGTTCTCATTTTCGCAAACAAGCAG
genomic: ACGTTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTTTGGAGgtatttgtca ... tgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
aggtttacaaaaataatacttaatactaattgttttctctgaacctgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
tactaat putative branch site (score: 1)
tacaaaaataatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattctccttgggcactggttattgcctatgaattgcgatttcaggtttacaaaaataatacttaatactaattgttttctctgaacctgtattccagGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTCGCAAACAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - ctccttg
- - - - - - - - - - - tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa