1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tccaatgcaatggtaaaatttattagggacccaaacacagacctaaaacatatttaagcatacttattattatctgattttttatttttatgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTAAA
species | Glycine max |
transcript | GLYMA12G37130.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAG TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|6846254|gb|AW348544.1|AW348544
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGNCTGGAGCAATGATACAG TNNAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|14012032|gb|BG726963.1|BG726963
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAG TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|192297062|gb|FG990333.1|FG990333
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAG ---A--TTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|15200173|gb|BI424211.1|BI424211
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAG TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|6071750|gb|AW101137.1|AW101137
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: TCTGCCTGGAGCAATGATACAG TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|51335049|gb|CO978915.1|CO978915
genomic: TCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAG TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTEST: gi|192299412|gb|FG992530.1|FG992530
genomic: GTTGCTTGGGACTACACTGGACTAATGATCTGCCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
EST: CCTGGAGCAATGATACAG TCTAGATTGGCATTGAGGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
genomic: CCTGGAGCAATGATACAGgttactgcct ... tgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGT
aaacatatttaagcatacttattattatctgattttttatttttatgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTAAA
ttttttatttttat CT-rich tract
tatttaagcatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaatgcaatggtaaaatttattagggacccaaacacagacctaaaacatatttaagcatacttattattatctgattttttatttttatgttttgcagTCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA