Sequence
atgc intronic sequence ATGC exonic sequencegttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccattttcagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
Basic information
species | Glycine max |
transcript | GLYMA12G36520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G36520.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G47460.1 (Arabidopsis thaliana), 3'ss of exon 5
gttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccatttt--cagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
| | || || |||| | ||| || | | || || | || | | ||||| |||||||| || | ||| ||||| | ||||||| |||| ||||||||| ||||||||||||| || || || || || ||||| | |||||||| |||||||
-gtaagtaagttattatattgttgttatattattatactttgtcagattgtttgagttctctaaggtgactattttttcagGTTACTGCTGGTGGGAAGTTATTTAATGTTATTGTAGACACAGAAGATACTGGAAAACAGCTCCTTCAAAAGGGTGATCTTCGGAGAAGAGTTACAATTA
upper sequence: GLYMA12G36520.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G62410.1 (Arabidopsis thaliana), 3'ss of exon 5
----gttggacagcataataacttgtacctgaatttataaatgaaaattc--ttatgttaagccttggaatattgccattttcagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
|||| | | || | | | | | | || | ||| || | ||| | || ||| |||||||| || | ||| ||||||||| |||||||||| ||| ||||| ||||||||||||| || || || || || |||||| |||||||| |||||||
gtagactggatatcttatcatttcacaataaacactgt---tgggatttcaattgcctgaagtcactttgc-ttcttgtttccagGTTACTGCTGGTGGCAAGTTGTATGATGTTGTTGTAGACTCAGAAGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATTA
upper sequence: GLYMA12G36520.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0022g00060.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------gttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccattttcagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
|| | || |||| | | | || ||||| | | ||| | || | ||| | || || ||||| | || | ||||||||||| |||||||||||| ||||||||||| |||||||||| ||| || || ||||| |||| | |||||||| || || |
gttgggaatgcatgatagtatataattggtttgctttcaagggcttaatt-catttgccaatgtttatgactacaaaataacatacgcattcttatgctgagttcacttatagGTTGCTGCTGGTGGAAAGTTGTTTAATGTTGTTGTAGACACAGAAAACACTGGAAAACTACTGCTTCAAAATGGTGATCTCCGGAGAAGAGTAACGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgaatttataaatgaaaattcttatgttaagccttggaatattgccattttcagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
ccattttc CT-rich tract
tttataaatgaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccattttcagGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG