1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtcctctttaattacatatataggtgctagactgctagtacttttgctcttacaaatttttgttggaaggcaactgactagtgactaacattgatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAG
species | Glycine max |
transcript | GLYMA12G35830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAANAT CTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGGEST: gi|207832476|gb|GD804804.1|GD804804
genomic: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATATgtatgtcctc ... gatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGG
EST: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATAT CTCCATGATGTTGTTGCTTGEST: gi|151411496|gb|EV281307.1|EV281307
genomic: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATATgtatgtcctc ... gatttgacagCTCCATGATGTTGTTGCTTG
EST: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATAT CTCCATGATGCTGTTGCTTGCACTTTCCTTGTCGAGCTGCGGCTAAAGCGGEST: gi|192332094|gb|FK024568.1|FK024568
genomic: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATATgtatgtcctc ... gatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGG
EST: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATAT CTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCT--ACCGG
genomic: CAGCACCACCATATTTCAACGACAAAAACATGGCATCAGACAAGCAATATgtatgtcctc ... gatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGG
tcttacaaatttttgttggaaggcaactgactagtgactaacattgatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAG
aaatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctctttaattacatatataggtgctagactgctagtacttttgctcttacaaatttttgttggaaggcaactgactagtgactaacattgatttgacagCTCCATGATGTTGTTGCTTGCACTTTCCTTGTCGAGCTGCAGCTAAAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG