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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaattaatatgtatcactttttctcctccaaaaaatcatttttactcattttaagtttacttatttgacatggtaattttaagagttacatccgctagttttgtacagtttttatagatattgattggatattagaatctgacacaaagtttgatatttttggttctattttcagATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA

Basic information

species Glycine max
transcript GLYMA12G35490.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35490.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaatatgtatcactttttctcctccaaaaaatcatttttactcattttaagtttacttatttgacatggtaattttaagagttacatccgctagttttgtacagtttttatagatattgattggatattagaatctgacacaaagtttgatatttttggttctattttcagATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                                                                         |||    |    || ||| || ||   || | ||||  | | |      |    |  ||         | || || |     || |  |||||| |||||||| || || ||||| ||| | ||| | ||||| |||||||| |||||||||||||| || || ||||||||||| |||||||| ||||   
--------------------------------------------------------------------------------------gtaagtc---ttttttattttggttcatggttaaaagattgtaagtcttctcttacttgggatctttgcggttatgttctctaaact-tactcagATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGGCACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCAAACC

upper sequence: GLYMA12G35490.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaatatgtatcactttttctcctccaaaaaatcatttttactcattttaagtttacttatttgacatggtaattttaagagttacatccgctagttttgtacagtttttatagatattgattggatattagaatctgacacaaagtttgatatttttggttctattttcagATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                                                                        |||||   ||   ||   ||  | | | |   |   | | || | | |  |    | ||        |  |   || ||  || | | |||||||||| ||||| || ||||||||||| || ||| | || |  ||||||||  |||| |||  ||| ||||| |||||||| || |||||||||||||   
--------------------------------------------------------------------------------------gtgagttctttctcttacggtttcatattatcgctt--tttcgactcggttatgcggtgtg-tgtgtgatcagtcgttgtt--ttgtttcttcagATTCCAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGATCAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACC

upper sequence: GLYMA12G35490.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 3'ss of exon 6
gtgagttaattaatatgtatcactttttctcctccaaaaaatcatttttactcattttaagtttacttatttgacatggtaattttaagagttacatccgctagttttgtacagtttttatagatat-tgattggatattagaatctgacacaaagtttgatatttttggttctattt----tcagATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                         | | ||| | |  ||||  ||    | ||      | ||  |  ||  | ||        |  |    |   |||  ||||  |||  | |||    || |  ||    | |    ||||| |  |||    ||| |    |||||| || |||||||| ||||||||||| |||||||| || || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| |
----------------------------------------gtgagtttcatttgttttt-gtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcagATACCGGAAGACCTTCATTTTGTGCTGAGAATGCGGCATACCTTTGAATCTCTTGGGTATCAATCTGGGTTCTACCTCTCCCAGCTCTTCTCTTCAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattggatattagaatctgacacaaagtttgatatttttggttctattttcagATTCCTGAAGACCTCCATTTTGTGCTTAGAATGCGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                           ttctattttc  CT-rich tract
                         aaagtttgatattttt  TA-rich tract