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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcagGTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTG

Basic information

species Glycine max
transcript GLYMA12G34750.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 10
gtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcagGTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTG
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--------------------------------------------------------------------------------------gtaagccattgtcattttgtttcatctttaaaaatatttc-----tgttgactcact----tgatgtttgtgatgcagATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcagGTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTG
 ggttgac  putative branch site (score: 4)
                                         tcttcat  putative PPT
                        ttcaataatcattaaa  TA-rich tract