Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcatgtgatctacactgagataattctgctttctctatttagttataactgtatttgttgacactccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG

Basic information

species Glycine max
transcript GLYMA12G34410.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34410.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaag-tgttcatgtgatcta--cactgagataattctgctttct-----ctatttagttataactgtatttgttgac-actccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG
||||| || |      | | |  |||     |||| |  || |       | | ||    |    |||  |  |  |    ||||||| |||||||||||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  ||
gtaagctgcttgctaaaaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccagGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGG

upper sequence: GLYMA12G34410.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtaagtgttcatgtgatctacactgagataattctgctttctctatttagttataactgt-atttgttgacactccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG
                             | |  |  ||    | |        | ||   |||||||    | |  ||||     | ||||  |   ||||||||| ||||||||||| || || || || |||||||| || || ||||| ||||||||||||||| |||| |||
gtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccagGCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295197|gb|FG986916.1|FG986916
EST:     TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGG                         GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG
genomic: TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGgtaagtgttc ... gacactccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG
EST: gi|254319138|gb|GR828866.1|GR828866
EST:     TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGG                         -CAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTA-CATTCTCTTG
genomic: TTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGgtaagtgttc ... gacactccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagataattctgctttctctatttagttataactgtatttgttgacactccagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG
                     tatttagttataactg  TA-rich tract