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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttacttattgaaccattaaacatagtagggctattgtttacacaaattcgtcttaccttgtagGTCTTTCAATCTGGTTCCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCGACAAG

Basic information

species Glycine max
transcript GLYMA12G32860.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------gtttgt-tttacttattgaaccattaaacatagtagggctattgtttacacaaattcgtcttaccttgtagGTCTTTCAATCTGGTTCCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCGACAAG
               |||    |||||  | |  ||    || |    |   |||| | |    ||  ||   | ||  || |||||||   |||| ||||| ||| |||| || || || || || || ||||| | | | ||||| |||||||||||||||||||||||||| |  ||
gtaagtcttggaacagttaaaatttaccaagtagactg--aacctgtatgatgctaatctgctgacttatgtattttggct-gtagGTCCAACAATATGGTTTCTAGCTATTATCTATTTCATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaccattaaacatagtagggctattgtttacacaaattcgtcttaccttgtagGTCTTTCAATCTGGTTCCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCGACAAG
                                         gtcttac  putative branch site (score: 3)
                                          tcttacctt  CT-rich tract
      attaaacata  TA-rich tract