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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaattgtcttttttttttcttcaatacttgcaataggtgatttagttgaaccttcccatcaagactgaacgtactctattcttaattcttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGAGTTGTTCTTAAATTCAGTGAATTTCTGATCGCACCTAATATATTGT

Basic information

species Glycine max
transcript GLYMA12G31040.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193651905|gb|FK597680.1|FK597680
EST:     GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|31309902|gb|CD395105.1|CD395105
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193426837|gb|FK392580.1|FK392580
EST:     AATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193534919|gb|FK489083.1|FK489083
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCAT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCAT
EST: gi|207748325|gb|GD718510.1|GD718510
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|208133167|gb|GD932108.1|GD932108
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|208309504|gb|GE103366.1|GE103366
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|207829138|gb|GD800102.1|GD800102
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|254329948|gb|GR839501.1|GR839501
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|6952084|gb|AW424152.1|AW424152
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|151413165|gb|EV282973.1|EV282973
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193513031|gb|FK470901.1|FK470901
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAATACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|26059923|gb|CA802837.1|CA802837
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|209707025|gb|BW683262.1|BW683262
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|18716199|gb|BM522876.1|BM522876
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|24205182|gb|BU964435.1|BU964435
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193441316|gb|FK410025.1|FK410025
EST:     GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193427346|gb|FK396172.1|FK396172
EST:     GTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: GTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|192315373|gb|FK009637.1|FK009637
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|12496286|gb|BG046997.1|BG046997
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGGGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|14010951|gb|BG725881.1|BG725881
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|209724743|gb|BW677785.1|BW677785
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|208272803|gb|GE066267.1|GE066267
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|31310979|gb|CD396182.1|CD396182
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCCCTGGGGAAATCGTACCGTGTCTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCA-TGGGGAAATCGTACCGTGTCTT
EST: gi|193561529|gb|FK518578.1|FK518578
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|207689269|gb|GD670822.1|GD670822
EST:     GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|207760119|gb|GD730866.1|GD730866
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|120495150|gb|EH223317.1|EH223317
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgaaccttcccatcaagactgaacgtactctattcttaattcttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGAGTTGTTCTTAAATTCAGTGAATTTCTGATCGCACCTAATATATTGT
                                           tcttaat  putative branch site (score: 3)
                                          ttctt  CT-rich tract
                               tctattcttaattctt  TA-rich tract