Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G700148_T01 (Zea mays), 3'ss of exon 5
gtaaatttgaatgtaattttgctagtatac---actttttttccttattgttttctttcaaatgcatcttatt----agtccctttttatctta------agGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA
    | | ||| |   | |  | | |   |    | | |  |  || ||   |||| | | |  |  |||| |    || |   ||  ||  |       ||||| ||||| |||||||||||||| ||||| || || || |||||  ||||||||   ||||||||| ||||| || ||||||| |||||   ||| |||
--tcagtggaaaggcttctcaccactgcgctaggcctgtcatttttgttacattctgttacactctacttaattaataggctacttgaattctgcatatcagGGCTGATCGAATGGCACAACTTCTAGATGAGCGTGATCTAGGTGTGCTGACATCTGTCATGAGTCTTTTTGTTTCACTAGTATCCAACAATTCTGAAGCA

upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA
       ||  | |||   ||   |  |||   || |||  || |  |  |   ||      ||  | || |||    | ||  |  ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| ||  | ||||| || || |||||||| 
------gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcg---tatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG

upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA
||   | ||||     ||  | || |      ||   ||   |  ||  | |||||| || ||  || |         | ||  |  ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| ||  | ||||| ||||| |||||||| 
gtgtgtgtgaacactcttgggttactggttgtttgagtttacttgtgcat-ctttcatattcactttgtcg-------tatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAACAATCATGAGGCG

upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 5
-------gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttat-----cttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA
        |  |||   |  |     | ||   | |||  |   || | ||  | | | |   |  |     |   |  | |  ||||        || ||| | ||||||||||| || ||| | |||||||| || || ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||
cttcttgtttcattatgaaatgggcattctttgaaacatgtgggttgcctaa-gatgtgtcctatttatgcttaggtgattctcttttgcaaacctttcagGTCAGATCGGATGGCGCAGCTTTTAGATGAACGTGATCTGGGTGTCTTGACATCTTCAATGAGCCTTCTTGTTGCTTTAGTATCAAACAACCATGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA
                                      tccctttttatctt  CT-rich tract
       ttattgttttcttt  TA-rich tract