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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcatttaggtaattaaatgtcattcaatttatcaacaacatatattgatttgatgcataatgtcatccattaattatcaatcgttgcatacttttttctaggttggagttttatcaaatattaatggcaaaatgctttttttcattaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG

Basic information

species Glycine max
transcript GLYMA12G30430.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405212|gb|EV275026.1|EV275026
EST:     CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCG                         ATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
genomic: CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCGgtgagtttca ... attaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
EST: gi|19453281|gb|BM954691.1|BM954691
EST:     CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCG                         ATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
genomic: CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCGgtgagtttca ... attaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
EST: gi|16349393|gb|BI974988.1|BI974988
EST:     CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCG                         ATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
genomic: CAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCGgtgagtttca ... attaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
EST: gi|58021743|gb|CX708484.1|CX708484
EST:     AAACTTNGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCG                         ATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT
genomic: -AACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCTCTGCGgtgagtttca ... attaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttggagttttatcaaatattaatggcaaaatgctttttttcattaatgcagATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG
                                  tgctttttttcatt  CT-rich tract
                              aaaatgctttttttca  TA-rich tract