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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaagtgttccccattgtatggtttatggtttgcttcaataaaattatatttttaccatcccttgttattattctagttcaattttcattttagaactttttttttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCT

Basic information

species Glycine max
transcript GLYMA12G17950.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19052928|gb|BM731595.1|BM731595
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|193679263|gb|FK619277.1|FK619277
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|18041345|gb|BM309639.1|BM309639
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCT
EST: gi|20812894|gb|BQ297372.1|BQ297372
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|17519265|gb|BM188307.1|BM188307
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|9900546|gb|BE609514.1|BE609514
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|5342399|gb|AI794683.1|AI794683
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|5126396|gb|AI748132.1|AI748132
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: gi|208076658|gb|GD875587.1|GD875587
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG                         CTTAGCTGATATGGCAGCCAATCC
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttgttattattctagttcaattttcattttagaactttttttttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCT
                                     ctttttttttttttgc  CT-rich tract
               tagttcaattttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagagaagtgttccccattgtatggtttatggtttgcttcaataaaattatatttttaccatcccttgttattattctagttcaattttcattttagaactttttttttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG