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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccttgttactcgtccatcatctttatcacgaaaagtagctagcaataaatactcacactatacattagtttattttggtgaatgtcacaatacattactgttgtcatagtcatttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGCGAATAAGCATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAA

Basic information

species Glycine max
transcript GLYMA12G16650.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16650.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 5
gtatgtccttgttactcgtccatcatctttatcacgaaaagtagctagcaataaatactcacactatacattagtttattttg-gtgaatgtcacaatacattactgttgtcatagtcatttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGCGAATAAGCATGCAGCTATT---CGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAA
                                                                   | || |  |||| |   ||| |  | | |||| |   || |  |  |  |  || ||       |    |  |||||   | | | ||   |||||   | || ||||||||||||||||| ||||| || ||||||||||  |  || |||||| ||| |   || || || ||||| |||||||| || |||||| ||||  ||    
-------------------------------------------------------------------aaataaaattatctgatgtggac-tgaaaatagaggtct-taattgtgttttttcgtattaagcacctaggctcttacaatcttgttgg--atgtt---taaaacagGTTGCTGATTTTGGGCTTTCGAGGGAAGAGATGGTTAGCAAACATGCATCTAATATACGAGGAACTTTTGGATATCTTGATCCTGAGTATGTATCAACAA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGCGAATAAGCATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAA
                    tcttaat  putative branch site (score: 3)
                      ttaatcttta  TA-rich tract