1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatagttaatcttaatgttacccatgcaaattaagttatatgttgttttcactttactaactggtgccttttaatattattttagTCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAAAGTGATATATACAATTATCCTCTTGAAGAGTACAATAAAGTTCTTGATA
species | Glycine max |
transcript | GLYMA12G14000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAAAGCAGCTTTGTTAGAAAAG TCTATTAGAAAAAGAGCTATTGGAACGCCTTACAAAAAGGAGTTTATCAACEST: gi|298193864|gb|HO040512.1|HO040512
genomic: GAAAAAGCAGCTTTGTTAGAAAAGgttatagtta ... attattttagTCTATT-GAAAAAGAGCTATTGGAACGCCTT-CAAAAAGGAGTTTATCAAC
EST: AGAGAAGAGAAGGCTGAAAAAGCAGCTTTGTTAGAAAAG TCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAAEST: gi|193393421|gb|FK358825.1|FK358825
genomic: AGAGAAGAGAAGGCTGAAAAAGCAGCTTTGTTAGAAAAGgttatagtta ... attattttagTCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAA
EST: GAGAAGAGAAGGCTAGAAAAAGCAGCTTTGTTAGAAAAG TCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAA
genomic: GAGAAGAGAAGGCT-GAAAAAGCAGCTTTGTTAGAAAAGgttatagtta ... attattttagTCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAA
ttaagttatatgttgttttcactttactaactggtgccttttaatattattttagTCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAAAGTGATATATACAATTATCCTCTTGAAGAGTACAATAAAGTTCTTGATA
ttatttt CT-rich tract
ttttaatattatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatagttaatcttaatgttacccatgcaaattaagttatatgttgttttcactttactaactggtgccttttaatattattttagTCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAAAGTGATATATACAATTATCCTCTTGAAGAGTACAATAAAGTTCTTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA