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gtatttgattgagttcacctattcttatagaaatcaactagagtgatgtctgtattttggtgttttaatttatttattttttccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTA
species | Glycine max |
transcript | GLYMA12G11820.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCNNNNNNNCCCATCATTCEST: gi|213599371|gb|DB970347.1|DB970347
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgatt ... ccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCNNNNNNNCCCATCATTCEST: gi|298174331|gb|HO017667.1|HO017667
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgatt ... ccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCNNNNNNNCCCATCATTCEST: gi|15813443|gb|BI785718.1|BI785718
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgatt ... ccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCNNNNNNNCCCATCATTCEST: gi|13787288|gb|BG649880.1|BG649880
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgatt ... ccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCNNNNNNNCCCATCATTC
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgatt ... ccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTC
ctagagtgatgtctgtattttggtgttttaatttatttattttttccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTA
ttttaat putative branch site (score: 3)
tttatttattttttcc CT-rich tract
tattttggtgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgattgagttcacctattcttatagaaatcaactagagtgatgtctgtattttggtgttttaatttatttattttttccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA