1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaaagaacaaacataattgtatgtggaatattattgttcttatggttaattttgtgaagtgagctgtgattttctgtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCTATATATGACTTACAGTGGAGAGAACACATTTGGGCTTGTGTTCTGAAA
species | Glycine max |
transcript | GLYMA12G10510.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|209704750|gb|BW676067.1|BW676067
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|209696942|gb|BW660507.1|BW660507
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|18040023|gb|BM308317.1|BM308317
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|23730734|gb|BU763465.1|BU763465
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|254337996|gb|GR845459.1|GR845459
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|58017380|gb|CX704122.1|CX704122
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|151405049|gb|EV274863.1|EV274863
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCEST: gi|213601006|gb|DB983681.1|DB983681
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
ttattgttcttatggttaattttgtgaagtgagctgtgattttctgtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCTATATATGACTTACAGTGGAGAGAACACATTTGGGCTTGTGTTCTGAAA
ggttaat putative branch site (score: 4)
ttttctgttt putative PPT
ttatggttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaagaacaaacataattgtatgtggaatattattgttcttatggttaattttgtgaagtgagctgtgattttctgtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTCTATATATGACTTACAGTGGAGAGAACACATTTGGGCTTGTGTTCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA