1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgctgtattagtacatatatcttttgccaccccatgaaatttctctttttgaagtgtggggattgtctcatcttatatgtttatgtgtatgagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTA
species | Glycine max |
transcript | GLYMA12G10210.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|31474066|gb|CD416094.1|CD416094
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCCAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|13788666|gb|BG651257.1|BG651257
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|7691759|gb|AW759880.1|AW759880
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTNTGGGTTAAAGAACTTAAAGCTGGATEST: gi|20814174|gb|BQ298652.1|BQ298652
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|192299092|gb|FG990406.1|FG990406
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|209725577|gb|BW677879.1|BW677879
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|213592773|gb|DB981291.1|DB981291
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|31467872|gb|CD409900.1|CD409900
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|31471406|gb|CD413434.1|CD413434
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATEST: gi|209702927|gb|BW667449.1|BW667449
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
EST: GTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC TGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
genomic: GTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACgtgagtttaa ... gagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGAT
tttttgaagtgtggggattgtctcatcttatatgtttatgtgtatgagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTA
atcttatatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctgtattagtacatatatcttttgccaccccatgaaatttctctttttgaagtgtggggattgtctcatcttatatgtttatgtgtatgagtatgcagTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
cgctgta
- - - - - - - - - - - - - ccacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt