1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtttccataagaaatttgggagggaaaaaaaatctataaacattaggcaccctttagtacgaggctttatcactaatgtatttattttttgtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTC
species | Glycine max |
transcript | GLYMA12G09460.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGGTGGAG ATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTEST: gi|15812915|gb|BI785190.1|BI785190
genomic: GGCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGGTGGAGgtatgttttg ... gtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGT
EST: GGCTTGACATATATTCAACTATCTGCGGAAGACCATGAATGGTGGTGGAG ATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTEST: gi|207847923|gb|GD817814.1|GD817814
genomic: GGCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGGTGGAGgtatgttttg ... gtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGT
EST: GCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGGGTGGAG ATCAGTGCTGTGTGGTGGCTCAACAGCCAT
genomic: GCTTGACATACATTCAACTATCTGCGGAAGACCATGAATGGTGG-TGGAGgtatgttttg ... gtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCAT
ggcaccctttagtacgaggctttatcactaatgtatttattttttgtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTC
cactaat putative branch site (score: 2)
ttttttgt putative PPT
tttatcactaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttccataagaaatttgggagggaaaaaaaatctataaacattaggcaccctttagtacgaggctttatcactaatgtatttattttttgtgggtgcagATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGCGTCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT