1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaccgtttataatacctgtcctgttattaattagagcattgatgtggatctttctttgcatgtttaaatcataagataatcatccttaatgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTGTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAAC
species | Glycine max |
transcript | GLYMA12G09250.1 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGEST: gi|207783070|gb|GD751071.1|GD751071
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGAATGATGAAGEST: gi|7587973|gb|AW703779.1|AW703779
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGA-TGATGAAG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGEST: gi|15200734|gb|BI424502.1|BI424502
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGEST: gi|213601247|gb|DB956527.1|DB956527
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGEST: gi|261497099|gb|GT185167.1|GT185167
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGEST: gi|208198857|gb|GD998538.1|GD998538
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTG
EST: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTG ACATATCAAAAGTTCAAGATGATGAAG
genomic: AATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGgtatccttgt ... tgtaagttagACATATCAAAAGTTCAAGATGATGAAG
tggatctttctttgcatgtttaaatcataagataatcatccttaatgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTGTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAAC
atccttaat putative branch site
atgtttaaatcataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaccgtttataatacctgtcctgttattaattagagcattgatgtggatctttctttgcatgtttaaatcataagataatcatccttaatgtaagttagACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTGTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - -gatgtgg