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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttcccattcttttatgtttctgtagatagataaagcaacattcggtttcactttgaacattgatgatatctgcattagcatcagtaaagctacacaaagaatagatttgggcaaattttcatttctattttgtttaaatattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCA

Basic information

species Glycine max
transcript GLYMA12G07770.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934570|gb|BQ079600.1|BQ079600
EST:     TGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAG                         TTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
genomic: TGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
EST: gi|7591205|gb|AW706943.1|AW706943
EST:     GCTGACAGTTGATCCCACCAAAAGAATTACAG                         TTGAAGAANCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
genomic: GCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
EST: gi|16105043|gb|BI892783.1|BI892783
EST:     GATCTTGTTGAATAAA-TGCTGACAGTTGATCCCACCAAAAGAATTACAG                         TTGAAGAAGCA
genomic: GATCTTGTTGA-TAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaagaatagatttgggcaaattttcatttctattttgtttaaatattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCA
                    aaattttcatttctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttttcccattcttttatgtttctgtagatagataaagcaacattcggtttcactttgaacattgatgatatctgcattagcatcagtaaagctacacaaagaatagatttgggcaaattttcatttctattttgtttaaatattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCA

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