1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ggtctggtttaagtcgattatagtgctccatatatgctgtaatttattgtctttgactttgttatcttttattcacattcttgtatttccttttatgcagGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCCTTT
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAG GAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCEST: gi|209719159|gb|BW679752.1|BW679752
genomic: GCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAGgtcagtctta ... ttttatgcagGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGC
EST: GCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAG GAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGC
genomic: GCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAGgtcagtctta ... ttttatgcagGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGC
attgtctttgactttgttatcttttattcacattcttgtatttccttttatgcagGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCCTTT
ctttgac putative branch site (score: 4)
ttcttgtatttccttt putative PPT
tttgttatcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtctggtttaagtcgattatagtgctccatatatgctgtaatttattgtctttgactttgttatcttttattcacattcttgtatttccttttatgcagGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCCTTT
- tctggtt
- - - - - - - - - - - -tgctcca
- - - - - - - - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacattc