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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
gttatctctctttttcgaaat--acaaaagttgatagcctataccattaccat----ctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG
            ||| | | |  ||   | || ||  | |  ||||  | |||     | |  ||||   || || |  |  || || ||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||||||||| |||||||| || || |
-----------gtttgggatttgacttcattttattcctttaaccaggatcataaatttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193540711|gb|FK494361.1|FK494361
EST:     GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAG                         GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctc ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
EST: gi|213606684|gb|DB959073.1|DB959073
EST:     GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAG                         GGTTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctc ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcctataccattaccatctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG
                                          ttttgat  putative branch site (score: 4)
                                    ttgtaattttgatt  TA-rich tract