Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttgcgtgggaatacaaagtgcttcatttttgtatgccatccagtctgaaagttctcgagtttgttctgagacctgacccgtatgatctggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTGTCGCCTACGCCTCATACT

Basic information

species Glycine max
transcript GLYMA12G06960.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 3
--ctttgcgtgggaatacaaagtgcttcatttttgtatgccatccagtctgaaagttctcgag--tttgttctgagacctgacccgtatgatctggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTG-TCGCCTACGCCTCATACT
       |   | ||     |||        |  |||    ||   | |||    ||   |    ||||||||||       ||    || ||| |    |||||| || |||||||| | ||| ||||| ||||||||||||||||| ||   ||||||||| |||||||||||| | |||      || |    |     |  
ttaaacacacagaaaattgtagtcaggacaatgcgtagtgtattttgcctgctgtttggtggacctttgttctgaacttctgcctac-tgttcttgc---gcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAA-

upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 5
ctttgcgtgggaatacaaagtgcttcatttttgta-tgccatccagtctgaaagttctcgagtttgttctgag-acctgacccgtatgatctggtatt---gcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTGTCGCCTACGCCTCATACT
       | | | |    ||| |||||||  |  | ||| |    || |      | || | |   ||||||     ||    | |   | ||||  |   |||||| || |||||||| | ||| || |||||||||||||||||||| ||   |||  | || ||||| |||||| | |||    |      | |        
-----tctagaagtttctagtacttcattccttcactgcaaaaacgtatattctgtttctattactttctgaacgtgtgctttgaaatttgtggtgctggtgcagAAGGATTGGAGAGAAAAGAGGGACGATTTCAAGAAAAAGGTTAGACGCATTGTTCGTAAATCACAGGAAATGCTCTGAAAGATAAGGAGCACAAGGGGGA

upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 5
ctttgcgtgggaatacaaagtgcttcatttttgtatgccatccagtctgaaagttctcgagtttgttctgagacctg-acccgtatgatctggta-ttgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTGTCGCCTACGCCTCATACT
 | |  ||   | |      | | |  |  | | ||   |   | | || |          ||| || |   ||||| |   |  |       || |||||||| || |||||||||||||| ||||| |||||||||||||| ||| ||||||| ||   ||||||||||||||| | |  ||  | |   || || ||||
-tatttgtattattttttttttcctt-tcatggaatataaagaaatttggatcaatgaagcttttttttcttacctgtattggcgtctctatataattgcagAAGGAATGGAGAGATAGGAGGGATGAATTCAAGAAAAAGGTGAGCAGATGTGTGAGACGGTCACAAGAAATGTTTTAAACTGCAGGCACAGCTTCTTACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193678074|gb|FK615832.1|FK615832
EST:     TCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: TCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193718133|gb|FK653403.1|FK653403
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTTAGCCGATG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: gi|193726878|gb|FK662794.1|FK662794
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTTAGCCGATG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: gi|193467346|gb|FK434391.1|FK434391
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTT-GCCG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: gi|298170658|gb|HO019282.1|HO019282
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGTA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|27425977|gb|CA937497.1|CA937497
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|209702411|gb|BW656387.1|BW656387
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193560164|gb|FK518883.1|FK518883
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: gi|193487584|gb|FK449709.1|FK449709
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|17022209|gb|BM093243.1|BM093243
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|15337487|gb|BI498143.1|BI498143
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGNTGAAGCTGCA                         AAAGAGTGAAGAGATAGGAGAGATGATTTCCAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193449046|gb|FK414275.1|FK414275
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|27426740|gb|CA938260.1|CA938260
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193692274|gb|FK631103.1|FK631103
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTT-GCCGATG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: gi|193677492|gb|FK615338.1|FK615338
EST:     TGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGT-AGCCGANGN
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193314440|gb|FK279275.1|FK279275
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|151400067|gb|EV269881.1|EV269881
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|208075089|gb|GD876370.1|GD876370
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: gi|193343999|gb|FK312375.1|FK312375
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193557717|gb|FK512030.1|FK512030
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
EST: gi|298173257|gb|HO020241.1|HO020241
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|151397271|gb|EV267144.1|EV267144
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGTCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193692948|gb|FK628501.1|FK628501
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGA
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGA
EST: gi|207786123|gb|GD758320.1|GD758320
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGGTGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|33387309|gb|CA850516.1|CA850516
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193623589|gb|FK575051.1|FK575051
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTT
EST: gi|209705175|gb|BW673715.1|BW673715
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193540732|gb|FK494382.1|FK494382
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGAATGATTTCAAGAAAA
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGA-TGATTTCAAGAAAA
EST: gi|14259958|gb|BG882866.1|BG882866
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATATGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|19268884|gb|BM885140.1|BM885140
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCG                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|208337702|gb|GE136484.1|GE136484
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193717462|gb|FK652860.1|FK652860
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
EST: gi|11688939|gb|BF596677.1|BF596677
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|20498658|gb|BQ273588.1|BQ273588
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|298182923|gb|HO028136.1|HO028136
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|20498754|gb|BQ273684.1|BQ273684
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|193304997|gb|FK271810.1|FK271810
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|209704114|gb|BW673714.1|BW673714
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: gi|209702412|gb|BW656388.1|BW656388
EST:     CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA                         AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaaagttctcgagtttgttctgagacctgacccgtatgatctggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTGTCGCCTACGCCTCATACT
                           acctgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttgcgtgggaatacaaagtgcttcatttttgtatgccatccagtctgaaagttctcgagtttgttctgagacctgacccgtatgatctggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGATTTGTCGCCTACGCCTCATACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - gcgtggg
- - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaccc